## ---- setup, include=FALSE---------------------------------------------------- knitr::opts_chunk$set(cache = TRUE) ## ----include=TRUE,results="hide",message=FALSE,warning=FALSE------------------ library(cBioPortalData) library(AnVIL) ## ----------------------------------------------------------------------------- api_errs <- system.file( "extdata", "api", "err_api_info.rda", package = "cBioPortalData", mustWork = TRUE ) load(api_errs) ## ----------------------------------------------------------------------------- class(err_api_info) length(err_api_info) lengths(err_api_info) ## ----------------------------------------------------------------------------- names(err_api_info) ## ----------------------------------------------------------------------------- err_api_info[['Inconsistent build numbers found']] ## ----------------------------------------------------------------------------- err_api_info ## ----------------------------------------------------------------------------- pack_errs <- system.file( "extdata", "pack", "err_pack_info.rda", package = "cBioPortalData", mustWork = TRUE ) load(pack_errs) ## ----------------------------------------------------------------------------- length(err_pack_info) lengths(err_pack_info) ## ----------------------------------------------------------------------------- names(err_pack_info) ## ----------------------------------------------------------------------------- err_pack_info ## ----------------------------------------------------------------------------- sessionInfo()