VERSION 1.15 ---------------------- - Default database version has been updated to v10-clust (including the motif annotations in the package) - New function: showLogo() shows the motif enrichment table as HTML. - Fix for maxRank checks: Now takes into account number of genes/regions in the database. - Support for new database format - importAnnotations(): Now adds the imported file name as attribute VERSION 1.11.+ ---------------------- - importRankings() updates for extended compatibility: * indexCol by default is now 'NULL', which will take the first column. If it is set to any other column, that one will be used instead. VERSION 1.7 ---------------------- - New function: reRank - ImportRankings: Added arguments "indexCol" and "warnMissingColumns" - Class rankingRcisTarget: Added methods rownames and colnames - Support for .parquet databases VERSION 1.3 ---------------------- - Added function: getMotifAnnotation VERSION 0.99.7 ---------------------- - Main update: Re-formatted ranking databases. They are now loaded from .feather files (and therefore, they are transposed: motifs are stored as rows, and genes/regions as columns, which allows to load only specific genes/region) VERSION 0.99.6 ---------------------- - Main update: Re-formatted annotation database. For easier subsetting. VERSION 0.99.1 ---------------------- - Main update: New class for the Rankings (rankingRcisTarget) VERSION 0.7 ---------------------- - Converted the ranking databases to an S4 class. VERSION 0.6 ---------------------- - Added function addLogo() - AUC is now returned as a class