mbOmic
This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mbOmic.
Integrative analysis of the microbiome and metabolome
Bioconductor version: 3.16
The mbOmic package contains a set of analysis functions for microbiomics and metabolomics data, designed to analyze the inter-omic correlation between microbiology and metabolites. Integrative analysis of the microbiome and metabolome is the aim of mbOmic. Additionally, the identification of enterotype using the gut microbiota abundance is preliminaryimplemented.
Author: Congcong Gong [aut, cre] 
Maintainer: Congcong Gong <congconggong33 at gmail.com>
citation("mbOmic")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mbOmic")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mbOmic")| enterotyping | HTML | R Script |
| Integrative analysis of metabolome and microbiome | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Metabolomics, Microbiome, Network, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0) |
| Imports | parallel, doParallel, psych, WGCNA, data.table, igraph, visNetwork, cluster, clusterSim, methods, graphics, stats |
| System Requirements | |
| URL | https://github.com/gongcongcong/mbOmic |
| Bug Reports | https://github.com/gongcongcong/mbOmic/issues |
See More
| Suggests | testthat (>= 3.0.0), knitr, rmarkdown, devtools, impute |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mbOmic_1.2.0.tar.gz |
| Windows Binary | mbOmic_1.2.0.zip (64-bit only) |
| macOS Binary (x86_64) | mbOmic_1.2.0.tgz |
| macOS Binary (arm64) | mbOmic_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mbOmic |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mbOmic |
| Bioc Package Browser | https://code.bioconductor.org/browse/mbOmic/ |
| Package Short Url | https://bioconductor.org/packages/mbOmic/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |