maser

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see maser.

Mapping Alternative Splicing Events to pRoteins


Bioconductor version: 3.16

This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS.

Author: Diogo F.T. Veiga [aut, cre]

Maintainer: Diogo F.T. Veiga <diogof.veiga at gmail.com>

Citation (from within R, enter citation("maser")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("maser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("maser")
Introduction HTML R Script
Mapping protein features to splicing events HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews AlternativeSplicing, Software, Transcriptomics, Visualization
Version 1.16.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), ggplot2, GenomicRanges
Imports dplyr, rtracklayer, reshape2, Gviz, DT, GenomeInfoDb, stats, utils, IRanges, methods, BiocGenerics, parallel, data.table
System Requirements
URL https://github.com/DiogoVeiga/maser
Bug Reports https://github.com/DiogoVeiga/maser/issues
See More
Suggests testthat, knitr, rmarkdown, BiocStyle, AnnotationHub
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package maser_1.16.0.tar.gz
Windows Binary maser_1.16.0.zip (64-bit only)
macOS Binary (x86_64) maser_1.16.0.tgz
macOS Binary (arm64) maser_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/maser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/maser
Bioc Package Browser https://code.bioconductor.org/browse/maser/
Package Short Url https://bioconductor.org/packages/maser/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive