mBPCR

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see mBPCR.

Bayesian Piecewise Constant Regression for DNA copy number estimation


Bioconductor version: 3.16

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Citation (from within R, enter citation("mBPCR")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mBPCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mBPCR")
mBPCR PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Microarray, SNP, Software, aCGH
Version 1.52.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License GPL (>= 2)
Depends oligoClasses, GWASTools
Imports Biobase, graphics, methods, utils, grDevices
System Requirements
URL http://www.idsia.ch/~paola/mBPCR
See More
Suggests xtable
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mBPCR_1.52.0.tar.gz
Windows Binary mBPCR_1.52.0.zip
macOS Binary (x86_64) mBPCR_1.52.0.tgz
macOS Binary (arm64) mBPCR_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mBPCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mBPCR
Bioc Package Browser https://code.bioconductor.org/browse/mBPCR/
Package Short Url https://bioconductor.org/packages/mBPCR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive