erccdashboard

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see erccdashboard.

Assess Differential Gene Expression Experiments with ERCC Controls


Bioconductor version: 3.16

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Author: Sarah Munro, Steve Lund

Maintainer: Sarah Munro <sarah.munro at gmail.com>

Citation (from within R, enter citation("erccdashboard")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("erccdashboard")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("erccdashboard")
erccdashboard examples PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray
Version 1.32.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>=2)
Depends R (>= 3.2), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0)
Imports edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr
System Requirements
URL https://github.com/munrosa/erccdashboard http://tinyurl.com/erccsrm
Bug Reports https://github.com/munrosa/erccdashboard/issues
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package erccdashboard_1.32.0.tar.gz
Windows Binary erccdashboard_1.32.0.zip
macOS Binary (x86_64) erccdashboard_1.32.0.tgz
macOS Binary (arm64) erccdashboard_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/erccdashboard
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/erccdashboard
Bioc Package Browser https://code.bioconductor.org/browse/erccdashboard/
Package Short Url https://bioconductor.org/packages/erccdashboard/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive