cghMCR

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see cghMCR.

Find chromosome regions showing common gains/losses


Bioconductor version: 3.16

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("cghMCR")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cghMCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")
cghMCR findMCR PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.56.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL
Depends methods, DNAcopy, CNTools, limma
Imports BiocGenerics(>= 0.1.6), stats4
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cghMCR_1.56.0.tar.gz
Windows Binary cghMCR_1.56.0.zip
macOS Binary (x86_64) cghMCR_1.56.0.tgz
macOS Binary (arm64) cghMCR_1.56.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cghMCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cghMCR
Bioc Package Browser https://code.bioconductor.org/browse/cghMCR/
Package Short Url https://bioconductor.org/packages/cghMCR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive