cancerclass

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see cancerclass.

Development and validation of diagnostic tests from high-dimensional molecular data


Bioconductor version: 3.16

The classification protocol starts with a feature selection step and continues with nearest-centroid classification. The accurarcy of the predictor can be evaluated using training and test set validation, leave-one-out cross-validation or in a multiple random validation protocol. Methods for calculation and visualization of continuous prediction scores allow to balance sensitivity and specificity and define a cutoff value according to clinical requirements.

Author: Jan Budczies, Daniel Kosztyla

Maintainer: Daniel Kosztyla <danielkossi at hotmail.com>

Citation (from within R, enter citation("cancerclass")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cancerclass")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cancerclass")
Cancerclass: An R package for development and validation of diagnostic tests from high-dimensional molecular data PDF R Script
Reference Manual PDF

Details

biocViews Cancer, Classification, Microarray, Software, Visualization
Version 1.42.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL 3
Depends R (>= 2.14.0), Biobase, binom, methods, stats
Imports
System Requirements
URL
See More
Suggests cancerdata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cancerclass_1.42.0.tar.gz
Windows Binary cancerclass_1.42.0.zip (64-bit only)
macOS Binary (x86_64) cancerclass_1.42.0.tgz
macOS Binary (arm64) cancerclass_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cancerclass
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cancerclass
Bioc Package Browser https://code.bioconductor.org/browse/cancerclass/
Package Short Url https://bioconductor.org/packages/cancerclass/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive