arrayMvout

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see arrayMvout.

multivariate outlier detection for expression array QA


Bioconductor version: 3.16

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author: Z. Gao, A. Asare, R. Wang, V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("arrayMvout")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("arrayMvout")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayMvout")
arrayMvout -- multivariate outlier algorithm for expression arrays PDF R Script
Reference Manual PDF

Details

biocViews Infrastructure, Microarray, QualityControl, Software
Version 1.56.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License Artistic-2.0
Depends R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy
Imports mdqc, affyContam, lumi
System Requirements
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Suggests MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package arrayMvout_1.56.0.tar.gz
Windows Binary arrayMvout_1.56.0.zip
macOS Binary (x86_64) arrayMvout_1.56.0.tgz
macOS Binary (arm64) arrayMvout_1.56.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/arrayMvout
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/arrayMvout
Bioc Package Browser https://code.bioconductor.org/browse/arrayMvout/
Package Short Url https://bioconductor.org/packages/arrayMvout/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive