TRESS

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TRESS.

Toolbox for mRNA epigenetics sequencing analysis


Bioconductor version: 3.16

This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detection of transcriptome wide m6A methylation regions 2. detection of transcriptome wide differential m6A methylation regions.

Author: Zhenxing Guo [aut, cre], Hao Wu [ctb]

Maintainer: Zhenxing Guo <zhenxing.guo at emory.edu>

Citation (from within R, enter citation("TRESS")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TRESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TRESS")
The TRESS User's Guide HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DifferentialMethylation, Epigenetics, PeakDetection, RNASeq, Software
Version 1.4.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License GPL-3 + file LICENSE
Depends R (>= 4.1.0), parallel, S4Vectors
Imports utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi
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Suggests knitr, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TRESS_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64) TRESS_1.4.0.tgz
macOS Binary (arm64) TRESS_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TRESS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TRESS
Bioc Package Browser https://code.bioconductor.org/browse/TRESS/
Package Short Url https://bioconductor.org/packages/TRESS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive