Path2PPI

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Path2PPI.

Prediction of pathway-related protein-protein interaction networks


Bioconductor version: 3.16

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

Author: Oliver Philipp [aut, cre], Ina Koch [ctb]

Maintainer: Oliver Philipp <contact at oliverphilipp.info>

Citation (from within R, enter citation("Path2PPI")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Path2PPI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Path2PPI")
Path2PPI - A brief tutorial HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Network, NetworkInference, Pathways, Proteomics, Software, SystemsBiology
Version 1.28.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL (>= 2)
Depends R (>= 3.2.1), igraph (>= 1.0.1), methods
Imports
System Requirements
URL http://www.bioinformatik.uni-frankfurt.de/
See More
Suggests knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Path2PPI_1.28.0.tar.gz
Windows Binary Path2PPI_1.28.0.zip
macOS Binary (x86_64) Path2PPI_1.28.0.tgz
macOS Binary (arm64) Path2PPI_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Path2PPI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Path2PPI
Bioc Package Browser https://code.bioconductor.org/browse/Path2PPI/
Package Short Url https://bioconductor.org/packages/Path2PPI/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive