GWAS.BAYES
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GWAS.BAYES.
GWAS for Selfing Species
Bioconductor version: 3.16
This package is built to perform GWAS analysis for selfing species. The research related to this package was supported in part by National Science Foundation Award 1853549.
Author: Jake Williams [aut, cre], Marco Ferreira [aut], Tieming Ji [aut]
Maintainer: Jake Williams <jwilliams at vt.edu>
citation("GWAS.BAYES")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GWAS.BAYES")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GWAS.BAYES")| GWAS.BAYES | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | AssayDomain, SNP, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-2 | GPL-3 |
| Depends | R (>= 4.0), Rcpp (>= 1.0.3), RcppEigen (>= 0.3.3.7.0), GA (>= 3.2), caret (>= 6.0-86), ggplot2 (>= 3.3.0), doParallel (>= 1.0.15), memoise (>= 1.1.0), reshape2 (>= 1.4.4), Matrix (>= 1.2-18) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, formatR, rrBLUP, qqman |
| Linking To | RcppEigen (>= 0.3.3.7.0), Rcpp (>= 1.0.3) |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GWAS.BAYES_1.8.0.tar.gz |
| Windows Binary | GWAS.BAYES_1.8.0.zip |
| macOS Binary (x86_64) | GWAS.BAYES_1.8.0.tgz |
| macOS Binary (arm64) | GWAS.BAYES_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GWAS.BAYES |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GWAS.BAYES |
| Bioc Package Browser | https://code.bioconductor.org/browse/GWAS.BAYES/ |
| Package Short Url | https://bioconductor.org/packages/GWAS.BAYES/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |