ChIPsim

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ChIPsim.

Simulation of ChIP-seq experiments


Bioconductor version: 3.16

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at gmail.com>

Citation (from within R, enter citation("ChIPsim")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPsim")
Simulating ChIP-seq experiments PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeq, Infrastructure, Software
Version 1.52.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License GPL (>= 2)
Depends Biostrings(>= 2.29.2)
Imports IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils
System Requirements
URL
See More
Suggests actuar, zoo
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPsim_1.52.0.tar.gz
Windows Binary ChIPsim_1.52.0.zip
macOS Binary (x86_64) ChIPsim_1.52.0.tgz
macOS Binary (arm64) ChIPsim_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ChIPsim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPsim
Bioc Package Browser https://code.bioconductor.org/browse/ChIPsim/
Package Short Url https://bioconductor.org/packages/ChIPsim/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive