BridgeDbR

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BridgeDbR.

Code for using BridgeDb identifier mapping framework from within R


Bioconductor version: 3.16

Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.

Author: Christ Leemans <christleemans at gmail.com>, Egon Willighagen <egon.willighagen at gmail.com>, Denise Slenter, Anwesha Bohler <anweshabohler at gmail.com>, Lars Eijssen <l.eijssen at maastrichtuniversity.nl>, Tooba Abbassi-Daloii

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Citation (from within R, enter citation("BridgeDbR")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BridgeDbR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BridgeDbR")
Tutorial HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, Cheminformatics, Metabolomics, Software
Version 2.8.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License AGPL-3
Depends R (>= 3.3.0), rJava
Imports curl
System Requirements
URL https://github.com/bridgedb/BridgeDbR
Bug Reports https://github.com/bridgedb/BridgeDbR/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me rWikiPathways
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BridgeDbR_2.8.0.tar.gz
Windows Binary BridgeDbR_2.8.0.zip
macOS Binary (x86_64) BridgeDbR_2.8.0.tgz
macOS Binary (arm64) BridgeDbR_2.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BridgeDbR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BridgeDbR
Bioc Package Browser https://code.bioconductor.org/browse/BridgeDbR/
Package Short Url https://bioconductor.org/packages/BridgeDbR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive