minionSummaryData
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see minionSummaryData.
Summarised MinION sequencing data published by Ashton et al. 2015
Bioconductor version: 3.11
Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.
Author: Mike Smith [aut, cre]
Maintainer: Mike Smith <grimbough at gmail.com>
Citation (from within R, enter
citation("minionSummaryData")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("minionSummaryData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("minionSummaryData")| Creating example MinION summary dataset | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, SequencingData |
| Version | 1.18.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 3.2.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | IONiseR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | minionSummaryData_1.18.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/minionSummaryData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/minionSummaryData |
| Package Short Url | https://bioconductor.org/packages/minionSummaryData/ |
| Package Downloads Report | Download Stats |