UPDATES: v2.0.15 Fixed bug that allowed NA's in covariates v2.0.14 Fixed bug when fitting Bayesian model without covariates (regression parameter names) Condensed handling of predictor/response from formula/data v2.0.13 Set default argument of newdata = NULL in getFitEsts for compatiability with ICcforest v2.0.12 Removed warnings involved with "contrasts" issue in model.matrix Added warning to getFitEsts if newdata is a data.frame v2.0.11 Fixed issue when bootstrap sample drops observations with only one covariate v2.0.10 Fixed issue with lnorm distribution Fixed contrast warning v2.0.9 Fixed bug when fitting Bayesian model without covariates Changed C++ PI to M_PI at Dirk's request Added ir_clustBoot to account for repeated measures Reduced run time for survCIs example (switched from ic_bayes to ic_par) v2.0.8 Allows for weights in ic_np Allows `plot_legend = F` for ic_npList v2.0.7 Fixed bug with linear predictor being offset pointed out by Ferenci Tamas v2.0.6 Added JSS citation v2.0.4 Fixed bug in NAs being mishandled v2.0.3 Fixed bug with expanding splines Offset covariates to have mean 0 for faster computation v2.0.2 Fixed bug regarding releveling with a single covariate with only two levels inside formula Internal changes to plotting Allowed p OR q to be supplied to survCIs Allowed MCMC chains to be run in parallel v2.0.1 Fixed rownames bug for imputeCens when imputeType = ‘median’ Fixed open/closed interval bug pointed out by Dr Bogaerts Added sampling from posterior survival curves Added confidence intervals Added names(fit) method v2.0.0 Added coef active binding for regression models (i.e. fit$coef is allowed) Fixed issue with fitting model with no regression parameters Reorganized code files Added Bayes models v1.3.6 Allow for declaration of whether intervals are open or closed for ic_sp and ic_np Added simulationFunctions.R Uses Roxygen for man files v1.3.5 Added parametric AFT models fixed bug in plot.icenRegFit regarding xlim and ylim for semiparametric model sped up ic_sp added vignette v1.3.4 fixed show() for summary class with no covariates added ic_np for fitting NPMLE specifically (*much* faster) switched syntax from “final_llk” to “llk” for all models made plot() and lines() more user-friendly Switched to RcppEigen, rather than including static C++ library v1.3.3 Fixed memory access issue reported by CRAN v1.3.2 Preparing for JSS submission Removed unpublished algorithms and methods v1.3.1 Imported method as reported by CRAN v1.3.0 getFitEsts is much faster added predict function added imputeCens function added generalized gamma distribution to choice of parametric families added imputed cross validation added plot method for sp_curves numerically stabilized ic_sp(model = 'ph') v1.2.8 Resolved issue of licenses and gave proper credit to the Eigen team for using their code for matrix algebra Switched to reference classes for fits, rather than lists with reassigned classes Fixed bug with getFitEsts Added methods for calculating the NPMLE (univariate or bivariate) ic_par sped up, especially for models with lots of covariates included use of cbind for response (i.e. cbind(l, u) ~…), rather than Surv(l, u, type = ‘interval’) ~ …, which is still supported Added constrained gradient ascent step to ic_sp Switched to partially numeric derivatives for ic_par, greatly speeding up calculations for models with many covariates v1.2.7 Added dependencies to “methods” package into NAMESPACE and DESCRIPTION v1.2.6 models allow for no covariates summary(fit) now returns a summary object rather than just printing At C++ level, switched isnan to ISNAN removed browser() call v1.2.5 Adding “weights” options to model fits Cleaned up manual Added warning to diag_covar if incorrect yType selected Added essIncData and essIncData_small datasets Switched to analytic derivatives for ic_sp Stabilized ic_par algorithm Preprocessed covariates with PCA v1.2.1-4 Fixing bugs reported by CRAN check v1.2.0 Added fully parametric models Added diagnostic tools diag_baseline and diag_covar Switched to Active Set Algorithm for semi-parametric models Added proportional odds model At C++ level, switched to abstract class IC_OptimInfo instead of ICPH_OptimInfo Added simulation of proportional odds v1.1.1: Stricter convergence criteria (10^-10 instead of 10^-7) Allows for bs_samples = 0 in ic_ph Allows for fitting of models with only 1 covariate Fixed bug in parameterization of imputation model Fixed bug that imputation model sometimes simulates Inf, breaking coxph Added dataset (mdata) slight modification in plot of survival curve