Last updated on 2024-05-11 10:48:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 10.43 | 82.38 | 92.81 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 6.76 | 59.22 | 65.98 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 114.85 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 157.23 | OK | |||
| r-devel-windows-x86_64 | 1.1.1 | 9.00 | 126.00 | 135.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1 | 5.86 | 78.99 | 84.85 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 4.81 | 77.45 | 82.26 | OK | |
| r-release-macos-arm64 | 1.1.1 | 99.00 | OK | |||
| r-release-macos-x86_64 | 1.1.1 | 143.00 | OK | |||
| r-release-windows-x86_64 | 1.1.1 | 9.00 | 123.00 | 132.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | 109.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.1 | 139.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.1 | 11.00 | 136.00 | 147.00 | OK |
Version: 1.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/56s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(otargen)
>
> test_check("otargen")
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [38ms]
\ Downloading data for ENSG00000169174 ...
| Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [1s]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [659ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [420ms]
\ Downloading data for ENSG00000143001 ...
v Downloading data for ENSG00000143001 ... [462ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [242ms]
\ Downloading data for ENSG00000141510 ...
| Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [1.1s]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [361ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [419ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [100ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [245ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [27ms]
\ Downloading data...
v Downloading data... [133ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [89ms]
\ Downloading data...
v Downloading data... [154ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
x Connecting to the Open Targets Genetics GrpahQL API... [114ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [15ms]
\ Downloading data for 1_154453788_C_T ...
| Downloading data for 1_154453788_C_T ...
v Downloading data for 1_154453788_C_T ... [572ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [119ms]
\ Downloading data for rs55808324 ...
v Downloading data for rs55808324 ... [428ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [31ms]
\ Downloading data...
v Downloading data... [136ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading data...
x Downloading data... [113ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [33ms]
\ Downloading data...
v Downloading data... [203ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading the data...
v Downloading the data... [125ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [47ms]
\ Downloading the data...
v Downloading the data... [133ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [35ms]
\ Downloading data...
v Downloading data... [166ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading data...
v Downloading data... [1.3s]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [34ms]
\ Downloading data...
v Downloading data... [542ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [27ms]
\ Downloading data...
v Downloading data... [230ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [43ms]
\ Downloading data for variant 1_55063514_G_A ...
v Downloading data for variant 1_55063514_G_A ... [186ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [108ms]
\ Downloading data for variant rs72698179 ...
v Downloading data for variant rs72698179 ... [131ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [20ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [248ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [11ms]
\ Downloading data for ENSG00000167207 ...
| Downloading data for ENSG00000167207 ...
v Downloading data for ENSG00000167207 ... [348ms]
\ Downloading data for ENSG00000096968 ...
v Downloading data for ENSG00000096968 ... [797ms]
\ Downloading data for ENSG00000138821 ...
v Downloading data for ENSG00000138821 ... [306ms]
\ Downloading data for ENSG00000125255 ...
v Downloading data for ENSG00000125255 ... [307ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [89ms]
\ Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [653ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [241ms]
\ Downloading data for ENSG00000169174 ...
| Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [299ms]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [504ms]
\ Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [705ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading data for ENSG00000167207 ...
x Downloading data for ENSG00000167207 ... [10.1s]
Error in test plot_l2g: Bad Gateway (HTTP 502)
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [19ms]
\ Downloading data...
v Downloading data... [2.5s]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [11ms]
\ Downloading data for variant 14_87978408_G_A ...
v Downloading data for variant 14_87978408_G_A ... [140ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [85ms]
\ Downloading data for variant rs55808324 ...
v Downloading data for variant rs55808324 ... [157ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [56ms]
\ Downloading data...
v Downloading data... [151ms]
\ Connecting the database...
v Connecting the database... [28ms]
\ Downloading data...
v Downloading data... [177ms]
\ Connecting the database...
v Connecting the database... [198ms]
\ Downloading data...
v Downloading data... [145ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [11ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [5s]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [161ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [5s]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [5.7s]
\ Connecting to the Open Targets Genetics GrpahQL API...
x Connecting to the Open Targets Genetics GrpahQL API... [106ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading data...
v Downloading data... [129ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [11ms]
\ Downloading data for GCST003044 , 14_88009660_C_T ...
v Downloading data for GCST003044 , 14_88009660_C_T ... [1.9s]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [46ms]
\ Downloading data...
v Downloading data... [463ms]
\ Connecting the database...
v Connecting the database... [23ms]
\ Downloading data...
v Downloading data... [220ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [27ms]
\ Downloading data...
v Downloading data... [197ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [12ms]
\ Downloading data...
v Downloading data... [154ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [122ms]
\ Downloading data...
v Downloading data... [137ms]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 79 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot_l2g.R:23:5'): test plot_l2g works ───────────────────────
FALSE is not TRUE
`actual`: FALSE
`expected`: TRUE
An error occurred in plotting.
Backtrace:
▆
1. └─base::tryCatch(...) at test-plot_l2g.R:3:3
2. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
3. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
4. └─value[[3L]](cond)
5. └─testthat::expect_true(FALSE, "An error occurred in plotting.") at test-plot_l2g.R:23:5
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 79 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc