CRAN Package Check Results for Package iCAMP

Last updated on 2022-09-29 09:55:33 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5.12 28.78 186.48 215.26 OK
r-devel-linux-x86_64-debian-gcc 1.5.12 22.79 139.31 162.10 OK
r-devel-linux-x86_64-fedora-clang 1.5.12 274.50 OK
r-devel-linux-x86_64-fedora-gcc 1.5.12 260.50 OK
r-devel-windows-x86_64 1.5.12 36.00 178.00 214.00 ERROR
r-patched-linux-x86_64 1.5.12 19.21 183.47 202.68 OK
r-release-linux-x86_64 1.5.12 17.64 175.97 193.61 OK
r-release-macos-arm64 1.5.12 79.00 OK
r-release-macos-x86_64 1.5.12 110.00 OK
r-release-windows-x86_64 1.5.12 37.00 270.00 307.00 OK
r-oldrel-macos-arm64 1.5.12 69.00 OK
r-oldrel-macos-x86_64 1.5.12 108.00 OK
r-oldrel-windows-ix86+x86_64 1.5.12 47.00 284.00 331.00 OK

Additional issues

donttest

Check Details

Version: 1.5.12
Check: examples
Result: ERROR
    Running examples in 'iCAMP-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: NTI.cm
    > ### Title: Calculate nearest taxon index (NTI) under multiple
    > ### metacommunities
    > ### Aliases: NTI.cm
    > ### Keywords: phylogenetic
    >
    > ### ** Examples
    >
    > data("example.data")
    > comm=example.data$comm
    > pd=example.data$pd
    >
    > # in this example, 10 samples from one metacommunity,
    > # the other 10 samples from another metacommunity.
    > meta.group=data.frame(meta.com=c(rep("meta1",10),rep("meta2",10)))
    > rownames(meta.group)=rownames(comm)
    >
    > nworker=2 # parallel computing thread number.
    > rand.time=4 # usually use 1000 for real data.
    > sigmntd=NTI.cm(comm=comm, meta.group=meta.group,
    + dis=pd, nworker = nworker,
    + weighted = TRUE, rand = rand.time,
    + sig.index="all")
    Warning: 'memory.limit()' is no longer supported
    All match very well.
    All match very well.
    Now calculating observed MNTD. Begin at Mon Sep 26 17:32:31 2022. Please wait...
    Warning: 'memory.limit()' is no longer supported
    All match very well.
    Error in serverSocket(port = port) :
     creation of server socket failed: port 11644 cannot be opened
    Error in serverSocket(port = port) :
     creation of server socket failed: port 11644 cannot be opened
    Warning in socketConnection("localhost", port = port, server = TRUE, blocking = TRUE, :
     port 11644 cannot be opened
    Error in socketConnection("localhost", port = port, server = TRUE, blocking = TRUE, :
     cannot open the connection
    Calls: NTI.cm ... makePSOCKcluster -> newPSOCKnode -> socketConnection
    Execution halted
Flavor: r-devel-windows-x86_64