CRAN Package Check Results for Package easyDifferentialGeneCoexpression

Last updated on 2022-12-07 10:49:57 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 50.23 395.16 445.39 ERROR
r-devel-linux-x86_64-debian-gcc 1.0 39.42 300.40 339.82 OK
r-devel-linux-x86_64-fedora-clang 1.0 556.57 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 559.57 NOTE
r-devel-windows-x86_64 1.0 244.00 720.00 964.00 OK
r-patched-linux-x86_64 1.0 43.44 378.39 421.83 OK
r-release-linux-x86_64 1.0 38.10 385.02 423.12 OK
r-release-macos-arm64 1.0 5.00 ERROR
r-release-macos-x86_64 1.0 8.00 ERROR
r-release-windows-x86_64 1.0 658.00 669.00 1327.00 OK
r-oldrel-macos-arm64 1.0 9.00 ERROR
r-oldrel-macos-x86_64 1.0 11.00 ERROR
r-oldrel-windows-ix86+x86_64 1.0 96.00 408.00 504.00 OK

Check Details

Version: 1.0
Check: examples
Result: ERROR
    Running examples in 'easyDifferentialGeneCoexpression-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: easyDifferentialGeneCoexpression
    > ### Title: Function that computes the differential coexpression of a list
    > ### of probesets in a specific dataset and returns the most significant
    > ### pairs
    > ### Aliases: easyDifferentialGeneCoexpression
    >
    > ### ** Examples
    >
    >
    > probesetList <- c("200738_s_at", "217356_s_at", "206686_at")
    > verboseFlag <- "TRUE"
    > batchCorrection <- "TRUE"
    > signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList,
    + "GSE3268", "description", "Normal", "Tumor", verboseFlag)
    Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
    Found 1 file(s)
    GSE3268_series_matrix.txt.gz
    HTTP error 404.File stored at:
    /tmp/RtmpntZw70/GSE3268_series_matrix.txt.gz
    Error in downloadFile(url, destfile = destfile, mode = "wb") :
     Failed to download /tmp/RtmpntZw70/GSE3268_series_matrix.txt.gz!
    Calls: easyDifferentialGeneCoexpression ... <Anonymous> -> getAndParseGSEMatrices -> downloadFile
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘R.utils’ ‘stringi’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘diffcoexp’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64