CRAN Package Check Results for Package BioInstaller

Last updated on 2020-08-07 10:07:24 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.7 13.61 135.23 148.84 NOTE
r-devel-linux-x86_64-debian-gcc 0.3.7 11.37 100.54 111.91 NOTE
r-devel-linux-x86_64-fedora-clang 0.3.7 178.02 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3.7 172.10 NOTE
r-devel-windows-ix86+x86_64 0.3.7 78.00 186.00 264.00 NOTE
r-patched-linux-x86_64 0.3.7 12.62 132.36 144.98 NOTE
r-patched-solaris-x86 0.3.7 299.70 ERROR
r-release-linux-x86_64 0.3.7 13.76 132.63 146.39 NOTE
r-release-macos-x86_64 0.3.7 NOTE
r-release-windows-ix86+x86_64 0.3.7 75.00 192.00 267.00 NOTE
r-oldrel-macos-x86_64 0.3.7 NOTE
r-oldrel-windows-ix86+x86_64 0.3.7 40.00 174.00 214.00 NOTE

Check Details

Version: 0.3.7
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'GRCh37_MT_ensGene.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3.7
Check: installed package size
Result: NOTE
     installed size is 11.7Mb
     sub-directories of 1Mb or more:
     doc 2.5Mb
     extdata 8.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3.7
Check: tests
Result: ERROR
     Running ‘testthat.R’ [64s/182s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(BioInstaller)
     >
     >
     > test_check("BioInstaller")
     cloning into '/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/github_demo0'...
     ── 1. Error: install.github (@test_install.R#12) ──────────────────────────────
     the SSL certificate is invalid
     Backtrace:
     1. BioInstaller::install.github(...)
     2. BioInstaller:::git.download(...)
     3. git2r::clone(github_url, destdir)
    
     trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
     Content type 'text/plain; charset=utf-8' length 3131 bytes
     ==================================================
     downloaded 3131 bytes
    
     trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
     Content type 'text/plain; charset=utf-8' length 3131 bytes
     ==================================================
     downloaded 3131 bytes
    
     trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
     Content type 'text/plain; charset=utf-8' length 3131 bytes
     ==================================================
     downloaded 3131 bytes
    
     cloning into '/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/github_demo3'...
     cloning into '/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/github_demo'...
     cloning into '/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/denpendence1'...
     /tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial not empty, overwrite?[y]
     Please input y/n/Y/N!
     /tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial not empty, overwrite?[y]
     Please input y/n/Y/N!
     /tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial not empty, overwrite?[y]
     More than 3 counts input, default is not to overwrite.
     /tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial existed, overwrite?[y]
     Please input y/n/Y/N!
     /tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial existed, overwrite?[y]
     Please input y/n/Y/N!
     /tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial existed, overwrite?[y]
     More than 3 counts input, default is not to overwrite.
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 62 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: install.github (@test_install.R#12)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86