Usage
cache_treebase(file = paste("treebase-", Sys.Date(), ".rda", sep = ""), pause1 = 3,
pause2 = 3, attempts = 10, max_trees = Inf, only_metadata = FALSE, save = TRUE)
Arguments
- file
- filename for the cache, otherwise created
with datestamp
- pause1
- number of seconds to hesitate between
requests
- pause2
- number of seconds to hesitate between
individual files
- attempts
- number of attempts to access a particular
resource
- max_trees
- maximum number of trees to return
(default is Inf)
- only_metadata
- option to only return metadata about
matching trees
- save
- logical indicating whether to save a file
with the resuls.
Value
saves a cached file of treebase
Description
A function to cache the phylogenies in treebase locally
Details
it's a good idea to let this run overnight