VAFneutral              Synthetic sequencing data generated from a
                        evolutionary based cancer simulation.
VAFselection            Synthetic sequencing data generated from a
                        evolutionary based cancer simulation.
lsq_plot                Plot cumulative distribution 'lsq_plot' Plots
                        the cumulative distribution of the data as well
                        as the best fit linear model line.
neutralitytest          Testing for neutrality on cancer sequencing
                        data
neutralitytestr         'neutralitytestr' package
normalized_plot         Plot normalized cumulative distribution
                        'normalized_plot' Plots the (normalized)
                        cumulative distribution of the data as well as
                        the theoretical expectation from a neutral
                        evolutionary model.
plot_all                Plot all plots in the package and make
                        composite figure. 'plot_all' Plots histogram,
                        linear model best fit plot and normalized plot
                        and plot and makes composite figure.
vaf_histogram           Plot VAF histogram 'vaf_histogram' Plots a
                        histogram of the variant allele frequencies.
