* using log directory 'd:/Rcompile/CRANpkg/local/4.5/MolgenisArmadillo.Rcheck'
* using R version 4.5.2 (2025-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MolgenisArmadillo/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MolgenisArmadillo' version '2.9.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MolgenisArmadillo' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [3s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [8s] ERROR
  Running 'testthat.R' [8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tibble)
  > library(MolgenisArmadillo)
  > library(webmockr)
  > 
  > test_check("MolgenisArmadillo")
  crul not installed, skipping enable
  HttrAdapter enabled!
  Httr2Adapter enabled!
  Saving _problems/test-object-46.R
  Saving _problems/test-object-86.R
  Attempting to install package [ 'C:/test/test.tar.gz' ]
  Attempting to install package [ 'C:/test/test.tar.gz' ]
  Package [ 'C:/test/test.tar.gz' ] installed
  Deleted 'project/folder2'
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  Renaming .csv column name `folder` to `source_folder`: please update your .csv file to silence this message.
  Renaming .csv column name `table` to `source_table`: please update your .csv file to silence this message.
  'target_folder' not specified in .csv file: defaulting to source folder name
  'target_table' not specified in .csv file: defaulting to source table name
  'target_folder' not specified in .csv file: defaulting to source folder name
  'target_table' not specified in .csv file: defaulting to source table name
  Argument `new project` has now been deprecated: please use `target_project` instead
  x View 'target_folder/target_table' failed with status '409': 'Project 'link-test222' already has an object 'core-variables/nonrep.alf'
  v View 'target_folder/target_table' successfully created
  Renaming .csv column name `folder` to `source_folder`: please update your .csv file to silence this message.
  Renaming .csv column name `table` to `source_table`: please update your .csv file to silence this message.
  'target_folder' not specified in .csv file: defaulting to source folder name
  'target_table' not specified in .csv file: defaulting to source table name
  [1] "project/folder1/obj1" "project/folder1/obj2" "project/folder2/obj3"
  [4] "project/folder2/obj4"
  [1] "project/folder1/obj1" "project/folder1/obj2" "project/folder2/obj3"
  [4] "project/folder2/obj4"
  Saving _problems/test-utils-17.R
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 237 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-object.R:30:3'): .upload_object handles errors ─────────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
  i Please use `with_mocked_bindings()` instead.
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-object.R:30:3
    2. │ └─testthat:::expect_condition_matching_(...)
    3. │   └─testthat:::quasi_capture(...)
    4. │     ├─testthat (local) .capture(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. └─testthat::with_mock(...)
    8.   └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
    9.     └─lifecycle:::deprecate_stop0(msg)
   10.       └─rlang::cnd_signal(...)
  ── Error ('test-object.R:70:3'): .upload_object uploads object ─────────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
  i Please use `with_mocked_bindings()` instead.
  Backtrace:
       ▆
    1. ├─testthat::expect_message(...) at test-object.R:70:3
    2. │ └─testthat:::expect_condition_matching_(...)
    3. │   └─testthat:::quasi_capture(...)
    4. │     ├─testthat (local) .capture(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. └─testthat::with_mock(...)
    8.   └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
    9.     └─lifecycle:::deprecate_stop0(msg)
   10.       └─rlang::cnd_signal(...)
  ── Error ('test-object.R:310:3'): .load_object loads the object from file ──────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
  i Please use `with_mocked_bindings()` instead.
  Backtrace:
       ▆
    1. ├─testthat::expect_silent(...) at test-object.R:310:3
    2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ ├─withr::with_output_sink(...)
    5. │   │ │ └─base::force(code)
    6. │   │ ├─base::withCallingHandlers(...)
    7. │   │ └─base::withVisible(code)
    8. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. └─testthat::with_mock(...)
   10.   └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
   11.     └─lifecycle:::deprecate_stop0(msg)
   12.       └─rlang::cnd_signal(...)
  ── Error ('test-utils.R:11:3'): .handle_request_error handles 500 ──────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
  i Please use `with_mocked_bindings()` instead.
  Backtrace:
      ▆
   1. └─testthat::with_mock(...) at test-utils.R:11:3
   2.   └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
   3.     └─lifecycle:::deprecate_stop0(msg)
   4.       └─rlang::cnd_signal(...)
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 237 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [7s] OK
* checking PDF version of manual ... [26s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 ERROR