.link_draw              Define the links to connect a pair of
                        observations
.mark_draw              Define the links to connect the marked
                        observations
active                  Plot Adding Context Settings
align_dendro            Plot dendrogram tree
align_group             Group and align observations based on a group
                        vector
align_hclust            Reorder or Group observations based on
                        hierarchical clustering
align_kmeans            Split observations by k-means clustering
                        groups.
align_order             Order observations based on weights
align_order2            Reorders layout observations based on specific
                        statistics.
align_phylo             Plot Phylogenetics tree
alignpatches            Arrange multiple plots into a grid
area                    Define the plotting areas
as_grob.Heatmap         Convert Object into a Grob
as_grob.formula         Convert Object into a Grob
as_grob.gList           Convert Object into a Grob
as_grob.ggalign::alignpatches
                        Convert Object into a Grob
as_grob.ggplot          Convert Object into a Grob
as_grob.grob            Convert Object into a Grob
as_grob.patch           Convert Object into a Grob
as_grob.patchwork       Convert Object into a Grob
as_grob.pheatmap        Convert Object into a Grob
as_grob.recordedplot    Convert Object into a Grob
as_grob.trellis         Convert Object into a Grob
circle_genomic          Create a Circular Layout for Genomic Data
circle_layout           Arrange plots in a circular layout
circle_switch           Determine the active context of circle layout
continuous_limits       Set continuous limits for the layout
coord_circle            Polar Coordinates with Enhanced Controls
cross_link              Add a plot to connect selected observations
cross_mark              Add a plot to annotate observations
cross_none              Reset layout ordering and panel group
draw_key_gshape         Key glyphs for legends
element_vec             Apply a function to the fields of an element
                        object
facet_sector            Polar coordinates with Facet support
fortify_data_frame      Build a data frame
fortify_data_frame.GRanges
                        Build a data frame
fortify_data_frame.character
                        Build a data frame
fortify_data_frame.default
                        Build a data frame
fortify_data_frame.dendrogram
                        Build a data frame
fortify_data_frame.matrix
                        Build a data frame
fortify_data_frame.phylo
                        Build a data frame
fortify_matrix          Build a Matrix
fortify_matrix.GISTIC   Build a matrix from a maftools object
fortify_matrix.MAF      Build a Matrix for OncoPrint
fortify_matrix.default
                        Build a Matrix
fortify_matrix.list_upset
                        Build a Matrix for UpSet plot
fortify_matrix.matrix   Build a matrix
fortify_matrix.matrix_oncoplot
                        Build a Matrix for OncoPrint
fortify_matrix.matrix_upset
                        Build a Matrix for UpSet plot
free_align              Free from alignment
genomic_density         Calculate Genomic Region Density
genomic_dist            Calculate inter-region distances for genomic
                        rainfall plots
geom_draw               Layer with Grid or Function
geom_gshape             Layer with a customized shape graphic using
                        grid functions.
geom_magick             Draw images as point shapes using magick
geom_pie                Pie charts
geom_rect3d             Add z-aesthetic for geom_tile
geom_subrect            Subdivide Rectangles
ggalign                 Add ggplot by Aligning discrete or continuous
                        variable
ggalignGrob             Generate a plot grob.
ggalign_attr            Get Data from the Attribute Attached by ggalign
ggalign_data_set        Attach supplementary data and levels for
                        ggalign
ggalign_stat            Get the statistics from the layout
ggcross                 Connect two layout crosswise
ggfree                  Add ggplot to layout without alignment
ggmark                  Add a plot to annotate selected observations
ggoncoplot              Create an OncoPrint
ggupset                 Create an UpSet plot
ggwrap                  Wrap Arbitrary Graphics to ggplot
hclust2                 Generate Tree Structures with Hierarchical
                        Clustering
heatmap_layout          Create a heatmap
inset                   Create a ggplot inset
is_layout               Reports whether 'x' is layout object
layer_order             Change the layer adding order
layout-operator         Layout operator
layout_design           Define the grid to compose plots in
layout_tags             Control Plot Tagging in Layouts
layout_theme            Modify theme of the layout
layout_title            Annotate the whole layout
link_draw               Define the links to connect a pair of
                        observations
link_line               Link the paired observations with a line
link_tetragon           Link the paired observations with a
                        quadrilateral
magickGrob              Rasterize a grob object with magick
mark_draw               Define the links to connect the marked
                        observations
mark_line               Link the observations and the panel with a line
mark_tetragon           Link the observations and the panel with a
                        quadrilateral
mark_triangle           Link the observations and the panel with a
                        triangle
memo_order              Sort matrix for better visualization
new_tune                Change the shape of the input object
no_expansion            Remove scale expansion
order2                  Ordering Permutation
pair_links              Helper function to create pairs of observation
                        groups
patch_title             Add patch titles to plot borders
plot_ideogram           Add an aligned cytoband ideogram plot
quad_active             Determine the Active Context of Quad-Layout
quad_layout             Arrange plots in the quad-side of a main plot
quad_scope              Modify operated Context in 'quad_layout()'
quad_switch             Determine the Active Context of Quad-Layout
raster_magick           Rasterize the ggplot layers
read_example            Read Example Data
scale_gshape_manual     Scale for 'gshape' aesthetic
scale_z_continuous      z scales
scheme_align            Align Specifications in the Layout
scheme_data             Plot data Specifications
scheme_theme            Plot default theme
stack_cross             Arrange plots crosswise horizontally or
                        vertically
stack_genomic           Create a stack Layout for Genomic Data
stack_layout            Arrange plots horizontally or vertically
stack_switch            Determine the active context of stack layout
theme_no_axes           Remove axis elements
tune                    Change the shape of the input object
tune.MAF                Convert the shape of a MAF for fortify method
tune.list               Convert the shape of a list for fortify method
tune.matrix             Convert the shape of a matrix for fortify
                        method
