* using log directory 'd:/Rcompile/CRANpkg/local/4.4/isoorbi.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'isoorbi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'isoorbi' version '1.3.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'isoorbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc       2.0Mb
    extdata   3.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking whether startup messages can be suppressed ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [7s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [20s] ERROR
  Running 'testthat.R' [19s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(dplyr)
  
  Attaching package: 'dplyr'
  
  The following object is masked from 'package:testthat':
  
      matches
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  > 
  > # run the test
  > test_check("isoorbi")
  Loading required package: isoorbi
  
  
  [ FAIL 5 | WARN 1 | SKIP 0 | PASS 350 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_blocks_functions.R:352:3'): test orbi_add_blocks_to_plot() ───
  orbi_add_blocks_to_plot(fig) has type 'object', not 'list'.
  Backtrace:
      ▆
   1. ├─base::suppressMessages(...) at test_blocks_functions.R:352:3
   2. │ └─base::withCallingHandlers(...)
   3. └─testthat::expect_type(orbi_add_blocks_to_plot(fig), "list")
  ── Failure ('test_plotting_functions.R:84:3'): orbi_plot_satellite_peaks() tests ──
  orbi_plot_satellite_peaks(df2) has type 'object', not 'list'.
  ── Failure ('test_plotting_functions.R:107:3'): orbi_plot_raw_data() tests ─────
  orbi_plot_raw_data(df, y = "ratio") has type 'object', not 'list'.
  ── Failure ('test_plotting_functions.R:139:3'): orbi_plot_isotopocule_coverage() tests ──
  `fig` has type 'object', not 'list'.
  ── Failure ('test_shotnoise_functions.R:94:3'): orbi_plot_shot_noise() tests ───
  orbi_plot_shot_noise(df, "time.min") has type 'object', not 'list'.
  
  [ FAIL 5 | WARN 1 | SKIP 0 | PASS 350 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [49s] OK
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 ERROR, 1 NOTE