* using log directory 'd:/Rcompile/CRANpkg/local/4.4/vDiveR.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'vDiveR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'vDiveR' version '2.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'vDiveR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s] OK
* checking whether the package can be unloaded cleanly ... [3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s] OK
* checking loading without being on the library search path ... [3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [5s] ERROR
Running examples in 'vDiveR-Ex.R' failed
The error most likely occurred in:

> ### Name: plot_conservation_level
> ### Title: Conservation Levels Distribution Plot
> ### Aliases: plot_conservation_level
> 
> ### ** Examples
> 
> plot_conservation_level(proteins_1host, conservation_label = 1,alpha=0.8, base_size = 15)
Ignoring unknown labels:
• fill : "Conservation level"
Error in `geom_half_point()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 2nd layer.
Caused by error in `fun()`:
! argument "layout" is missing, with no default
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
  3. │ ├─ggplot2::ggplot_gtable(data)
  4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  5. │   └─ggplot2:::by_layer(...)
  6. │     ├─rlang::try_fetch(...)
  7. │     │ ├─base::tryCatch(...)
  8. │     │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9. │     │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10. │     │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11. │     │ └─base::withCallingHandlers(...)
 12. │     └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 13. │       └─l$draw_geom(d, layout)
 14. │         └─ggplot2 (local) draw_geom(..., self = self)
 15. │           └─self$geom$draw_layer(...)
 16. │             └─ggplot2 (local) draw_layer(..., self = self)
 17. │               └─base::lapply(...)
 18. │                 └─ggplot2 (local) FUN(X[[i]], ...)
 19. │                   ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 20. │                   └─self$draw_panel(...)
 21. │                     └─ggplot2 (local) draw_panel(..., self = self)
 22. │                       └─base::lapply(...)
 23. │                         └─ggplot2 (local) FUN(X[[i]], ...)
 24. │                           └─self$draw_group(group, panel_params, coord, ...)
 25. │                             └─gghalves (local) draw_group(...)
 26. │                               └─transformation$compute_layer(transformation_df, transformation_params_new)
 27. │                                 └─ggplot2 (local) compute_layer(..., self = self)
 28. │                                   └─ggplot2:::dapply(...)
 29. │                                     └─base::lapply(...)
 30. │                                       └─ggplot2 (local) FUN(X[[i]], ...)
 31. │                                         └─ggplot2 (local) apply_fun(cur_data)
 32. │                                           └─ggplot2 (local) fun(x, ...)
 33. └─base::.handleSimpleError(...)
 34.   └─rlang (local) h(simpleError(msg, call))
 35.     └─handlers[[1L]](cnd)
 36.       └─cli::cli_abort(...)
 37.         └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [5s] OK
  Running 'testthat.R' [4s]
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 1 ERROR