Biclustering via Simplivariate Component Analysis

Documentation for package ‘SIMPLICA’ version 1.0.0

additiveMatrix	Generate an additive approximation of a data matrix
additiveMatrixFitter	Additive Pattern Fitter
componentCVPatterns	Cross-Validation of Simplivariate Component Patterns
defaultPatternFitters	Default Pattern Fitters for SIMPLICA
defaultPatternFunctions	Default pattern generators for SIMPLICA
fitness	Fitness function with automatic pattern selection per Simplivariate Component
fitnessForOneComponent	Compute best pattern-based fitness for a single Simplivariate Component
gaintegerMutation	Integer mutation operator for genetic algorithms
gaintegerOnePointCrossover	One-point crossover operator for integer-encoded genetic algorithms
gaintegerPopulationFactory	GA Integer Population Factory
globals	Global Variables Declaration
multiplicativeMatrix	Generate an multiplicative approximation of a data matrix
multiplicativeMatrixFitter	Multiplicative Pattern Fitter
plotComponentResult	Plot non-contiguous simplivariate components by pattern type, with optional reordering
print.summaryComponents	Print method for summaryComponents
SCAMonitorFactory	Simplivariate Component Analysis monitoring function factory for GA progress
simplica	SIMPLICA: Simultaneous Identification of Simplivariate Components
simplicaCV	Test Simplivariate Components with Cross-Validation Pattern Selection
simplicaToy	Toy matrix with one multiplicative and one additive bicluster
summaryComponents	Summarize GA-found Simplivariate Components