* using log directory 'd:/Rcompile/CRANpkg/local/4.6/rbiom.Rcheck' * using R Under development (unstable) (2025-09-03 r88788 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'rbiom/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'rbiom' version '2.2.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'rbiom' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 14.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [4s] OK * checking loading without being on the library search path ... [2s] OK * checking whether startup messages can be suppressed ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [22s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [4s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking examples ... [10s] ERROR Running examples in 'rbiom-Ex.R' failed The error most likely occurred in: > ### Name: adiv_corrplot > ### Title: Visualize alpha diversity with scatterplots and trendlines. > ### Aliases: adiv_corrplot > > ### ** Examples > > library(rbiom) > > p <- adiv_corrplot(babies, "age", stat.by = "deliv", fit = "gam") > > p Error in `fun()`: ! Problem while computing aesthetics. ℹ Error occurred in the 3rd layer. Caused by error: ! object 'Age (days)' not found Backtrace: ▆ 1. ├─base (local) ``(x) 2. ├─ggplot2:::print.ggplot(x) 3. │ ├─ggplot2::ggplot_build(x) 4. │ └─ggplot2:::ggplot_build.ggplot(x) 5. │ └─ggplot2:::by_layer(...) 6. │ ├─rlang::try_fetch(...) 7. │ │ ├─base::tryCatch(...) 8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 11. │ │ └─base::withCallingHandlers(...) 12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 13. │ └─l$compute_aesthetics(d, plot) 14. │ └─ggplot2 (local) compute_aesthetics(..., self = self) 15. │ └─base::lapply(aesthetics, eval_tidy, data = data, env = env) 16. │ └─rlang (local) FUN(X[[i]], ...) 17. └─base::.handleSimpleError(...) 18. └─rlang (local) h(simpleError(msg, call)) 19. └─handlers[[1L]](cnd) 20. └─cli::cli_abort(...) 21. └─rlang::abort(...) Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [22s] OK Running 'testthat.r' [21s] * checking PDF version of manual ... [27s] OK * checking HTML version of manual ... [19s] OK * DONE Status: 1 ERROR