* using log directory 'd:/Rcompile/CRANpkg/local/4.6/iCAMP.Rcheck' * using R Under development (unstable) (2025-09-03 r88788 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'iCAMP/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'iCAMP' version '1.5.12' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'iCAMP' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [29s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [52s] ERROR Running examples in 'iCAMP-Ex.R' failed The error most likely occurred in: > ### Name: snm > ### Title: Estimation of neutral taxa percentae and dispersal rate > ### Aliases: snm snm.boot snm.comm > ### Keywords: Other method > > ### ** Examples > > data("example.data") > comm=example.data$comm > treat=example.data$treat > rand.time=10 # usually use 1000 for real data. > snmtest=snm.comm(comm = comm, treat = treat, + rand = rand.time) All match very well. All match very well. Loading required namespace: minpack.lm Loading required namespace: Hmisc Loading required namespace: stats4 All match very well. Waiting for profiling to be done... Warning in stats::dnorm(R, 0, sigma) : NaNs produced Warning in stats::dnorm(R, 0, sigma) : NaNs produced Warning in stats::dnorm(R, 0, sigma) : NaNs produced Warning in stats::pbeta(d, N * m * p, N * m * (1 - p), lower.tail = FALSE) : NaNs produced Warning in stats::pbeta(d, N * m * p, N * m * (1 - p), lower.tail = FALSE) : NaNs produced Warning in stats::pbeta(d, N * m * p, N * m * (1 - p), lower.tail = FALSE) : NaNs produced Warning in stats::dnorm(R, 0, sigma) : NaNs produced Warning in stats::pbeta(d, N * m * p, N * m * (1 - p), lower.tail = FALSE) : NaNs produced Warning in stats::pbeta(d, N * m * p, N * m * (1 - p), lower.tail = FALSE) : NaNs produced Warning in stats::pbeta(d, N * m * p, N * m * (1 - p), lower.tail = FALSE) : NaNs produced Warning in stats::pbeta(d, N * m * p, N * m * (1 - p), lower.tail = FALSE) : NaNs produced Error in UseMethod("logLik") : no applicable method for 'logLik' applied to an object of class "mle" Calls: snm.comm ... -> -> -> AIC.default -> ll Execution halted * checking PDF version of manual ... [25s] OK * checking HTML version of manual ... [12s] OK * DONE Status: 1 ERROR