* using log directory 'd:/Rcompile/CRANpkg/local/4.6/fluxfinder.Rcheck' * using R Under development (unstable) (2025-09-03 r88788 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'fluxfinder/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'fluxfinder' version '1.2.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'fluxfinder' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [2s] ERROR Running examples in 'fluxfinder-Ex.R' failed The error most likely occurred in: > ### Name: ffi_compute_fluxes > ### Title: Compute fluxes for multiple groups (measurements) > ### Aliases: ffi_compute_fluxes > > ### ** Examples > > # No grouping > ffi_compute_fluxes(cars, group_column = NULL, "speed", "dist") Error in ll(object) : could not find function "ll" Calls: ffi_compute_fluxes ... tibble_quos -> eval_tidy -> -> AIC.default Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [3s] ERROR Running 'testthat.R' [3s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(fluxfinder) > > test_check("fluxfinder") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 94 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-models.R:3:3'): ffi_fit_models works ─────────────────────────── Error in `ll(object)`: could not find function "ll" Backtrace: ▆ 1. ├─fluxfinder::ffi_fit_models(cars$speed, cars$dist) at test-models.R:3:3 2. │ ├─generics::glance(mod) 3. │ └─broom:::glance.lm(mod) 4. │ ├─base::with(...) 5. │ └─base::with.default(...) 6. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 7. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 8. │ └─tibble::tibble(...) 9. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 10. │ └─rlang::eval_tidy(xs[[j]], mask) 11. ├─stats::AIC(x) 12. └─stats:::AIC.default(x) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 94 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [8s] ERROR Error(s) in re-building vignettes: --- re-building 'integrating-gasfluxes.Rmd' using rmarkdown Quitting from integrating-gasfluxes.Rmd:29-43 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `ll()`: ! could not find function "ll" --- Backtrace: ▆ 1. ├─fluxfinder::ffi_compute_fluxes(...) 2. │ └─base::lapply(x, f, ...) 3. │ └─fluxfinder (local) FUN(X[[i]], ...) 4. │ └─fluxfinder (local) fit_function(x$.norm_time, x[, gas_column], ...) 5. │ ├─generics::glance(mod) 6. │ └─broom:::glance.lm(mod) 7. │ ├─base::with(...) 8. │ └─base::with.default(...) 9. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 10. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 11. │ └─tibble::tibble(...) 12. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 13. │ └─rlang::eval_tidy(xs[[j]], mask) 14. ├─stats::AIC(x) 15. └─stats:::AIC.default(x) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'integrating-gasfluxes.Rmd' failed with diagnostics: could not find function "ll" --- failed re-building 'integrating-gasfluxes.Rmd' --- re-building 'intro-to-fluxfinder.Rmd' using rmarkdown Quitting from intro-to-fluxfinder.Rmd:187-206 [compute-fluxes] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `ll()`: ! could not find function "ll" --- Backtrace: ▆ 1. ├─fluxfinder::ffi_compute_fluxes(...) 2. │ └─base::lapply(x, f, ...) 3. │ └─fluxfinder (local) FUN(X[[i]], ...) 4. │ └─fluxfinder (local) fit_function(x$.norm_time, x[, gas_column], ...) 5. │ ├─generics::glance(mod) 6. │ └─broom:::glance.lm(mod) 7. │ ├─base::with(...) 8. │ └─base::with.default(...) 9. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 10. │ └─base::eval(substitute(expr), data, enclos = parent.frame()) 11. │ └─tibble::tibble(...) 12. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 13. │ └─rlang::eval_tidy(xs[[j]], mask) 14. ├─stats::AIC(x) 15. └─stats:::AIC.default(x) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'intro-to-fluxfinder.Rmd' failed with diagnostics: could not find function "ll" --- failed re-building 'intro-to-fluxfinder.Rmd' SUMMARY: processing the following files failed: 'integrating-gasfluxes.Rmd' 'intro-to-fluxfinder.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [27s] OK * checking HTML version of manual ... [3s] OK * DONE Status: 3 ERRORs