* using log directory 'd:/Rcompile/CRANpkg/local/4.6/JointFPM.Rcheck'
* using R Under development (unstable) (2025-09-03 r88788 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'JointFPM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'JointFPM' version '1.3.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'JointFPM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [3s] OK
* checking loading without being on the library search path ... [3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [5s] ERROR
Running examples in 'JointFPM-Ex.R' failed
The error most likely occurred in:

> ### Name: test_dfs_JointFPM
> ### Title: Tests DFs for JointFPMs.
> ### Aliases: test_dfs_JointFPM
> 
> ### ** Examples
> 
> # Test different dfs
> test_dfs_JointFPM(Surv(time  = start,
+                        time2 = stop,
+                        event = event,
+                        type  = 'counting') ~ 1,
+                   re_model = ~ pyridoxine + thiotepa,
+                   ce_model = ~ pyridoxine + thiotepa,
+                   re_indicator = "re",
+                   ce_indicator = "ce",
+                   dfs_ce = 1:3,
+                   dfs_re = 2,
+                   tvc_ce_terms = list(thiotepa   = 1:2),
+                   tvc_re_terms = list(pyridoxine = 2),
+                   cluster  = "id",
+                   data     = bladder1_stacked)
Error in UseMethod("logLik") : 
  no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')"
Calls: test_dfs_JointFPM ... cbind -> data.frame -> <Anonymous> -> AIC.default -> ll
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [48s] ERROR
  Running 'testthat.R' [48s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(JointFPM)
  > 
  > test_check("JointFPM")
  Starting 2 test processes
  [ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ]
  
  ══ Skipped tests (13) ══════════════════════════════════════════════════════════
  • On CRAN (13): 'test-mean_no.R:2:3', 'test-mean_no.R:17:3',
    'test-JointFPM.R:2:3', 'test-JointFPM.R:22:3', 'test-JointFPM.R:42:3',
    'test-JointFPM.R:62:3', 'test-JointFPM.R:83:3',
    'test-predict.JointFPM.R:2:3', 'test-predict.JointFPM.R:78:3',
    'test-predict.JointFPM.R:103:3', 'test-predict.JointFPM.R:130:3',
    'test-predict.JointFPM.R:156:3', 'test-predict.JointFPM.R:496:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-test_dfs_JointFPM.R:2:3'): Stable output of test run ───────────
  Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')"
  Backtrace:
      ▆
   1. └─testthat::expect_snapshot(...) at test-test_dfs_JointFPM.R:2:3
   2.   └─rlang::cnd_signal(state$error)
  ── Error ('test-test_dfs_JointFPM.R:25:5'): Stable output of test run ──────────
  Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')"
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-test_dfs_JointFPM.R:23:3
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. └─JointFPM::test_dfs_JointFPM(...) at test-test_dfs_JointFPM.R:25:5
    5.   └─base::lapply(...)
    6.     └─JointFPM (local) FUN(X[[i]], ...)
    7.       └─JointFPM:::test_df(...)
    8.         ├─base::cbind(out, list(stats::AIC(model$model), stats::BIC(model$model)))
    9.         │ └─base::cbind(deparse.level, ...)
   10.         │   └─base::data.frame(..., check.names = FALSE)
   11.         ├─stats::AIC(model$model)
   12.         └─stats:::AIC.default(model$model)
   13.           └─stats (local) ll(object)
  
  [ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 2 ERRORs