* using log directory 'd:/Rcompile/CRANpkg/local/4.5/miRetrieve.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'miRetrieve/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'miRetrieve' version '1.3.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'miRetrieve' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [2s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [27s] ERROR
  Running 'testthat.R' [27s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(miRetrieve)
  > 
  > test_check("miRetrieve")
  [ FAIL 6 | WARN 15 | SKIP 0 | PASS 204 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-fitlda.R:35:5'): Tests that 'plot_lda_term' returns a plot ───
  `plot_lda` has type 'object', not 'list'.
  ── Failure ('test-jointargets.R:69:5'): Tests that targets can be plotted ──────
  typeof(plot_target) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  ── Failure ('test-plotscore.R:41:5'): Tests plotting scores ────────────────────
  typeof(plot_animal) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  ── Failure ('test-plotscore.R:42:5'): Tests plotting scores ────────────────────
  typeof(plot_patients) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  ── Failure ('test-plotscore.R:43:5'): Tests plotting scores ────────────────────
  typeof(plot_biomarker) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  ── Failure ('test-plotscore.R:44:5'): Tests plotting scores ────────────────────
  typeof(plot_own) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  
  [ FAIL 6 | WARN 15 | SKIP 0 | PASS 204 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [31s] OK
* checking HTML version of manual ... [13s] OK
* DONE
Status: 1 ERROR