roar-package	roar-package
checkStep	checkStep-method
combineFisherMethod	combineFisherMethod-method
computePairedPvals	computePairedPvals-method
computePairedPvals, RoarDataset	computePairedPvals-method
computePairedPvals, RoarDatasetMultipleAPA	computePairedPvals-method
computePairedPvals,RoarDataset,numeric,numeric-method	RoarDataset-class
computePairedPvals,RoarDatasetMultipleAPA,numeric,numeric-method	RoarDatasetMultipleAPA-class
computePvals	computePvals-method
computePvals, RoarDataset	computePvals-method
computePvals, RoarDatasetMultipleAPA	computePvals-method
computePvals,RoarDataset-method	RoarDataset-class
computePvals,RoarDatasetMultipleAPA-method	RoarDatasetMultipleAPA-class
computeRoars	computeRoars-method
computeRoars, RoarDataset, numeric, numeric	computeRoars-method
computeRoars, RoarDatasetMultipleAPA, numeric, numeric	computeRoars-method
computeRoars,RoarDataset-method	RoarDataset-class
computeRoars,RoarDatasetMultipleAPA-method	RoarDatasetMultipleAPA-class
cores	cores-method
cores,RoarDataset-method	RoarDataset-class
cores,RoarDatasetMultipleAPA-method	RoarDatasetMultipleAPA-class
countPrePost	countPrePost-method
countPrePost,RoarDataset,logical	countPrePost-method
countPrePost,RoarDataset,logical-method	RoarDataset-class
countPrePost,RoarDataset-method	RoarDataset-class
countPrePost,RoarDatasetMultipleAPA	countPrePost-method
countPrePost,RoarDatasetMultipleAPA,logical-method	RoarDatasetMultipleAPA-class
countPrePost,RoarDatasetMultipleAPA-method	RoarDatasetMultipleAPA-class
countResults	countResults-method
countResults, RoarDataset	countResults-method
countResults, RoarDatasetMultipleAPA	countResults-method
countResults,RoarDataset-method	RoarDataset-class
countResults,RoarDatasetMultipleAPA-method	RoarDatasetMultipleAPA-class
fpkmResults	fpkmResults-method
fpkmResults, RoarDataset	fpkmResults-method
fpkmResults, RoarDatasetMultipleAPA	fpkmResults-method
fpkmResults,RoarDataset-method	RoarDataset-class
fpkmResults,RoarDatasetMultipleAPA-method	RoarDatasetMultipleAPA-class
getFisher	getFisher-method
meanAcrossAssays	meanAcrossAssays-method
pvalueCorrectFilter	pvalueCorrectFilter-method
pvalueCorrectFilter, RoarDataset	pvalueCorrectFilter-method
pvalueCorrectFilter, RoarDatasetMultipleAPA	pvalueCorrectFilter-method
pvalueCorrectFilter,RoarDataset,numeric,numeric,character-method	RoarDataset-class
pvalueCorrectFilter,RoarDatasetMultipleAPA,numeric,numeric,character-method	RoarDatasetMultipleAPA-class
pvalueFilter	pvalueFilter-method
pvalueFilter, RoarDataset	pvalueFilter-method
pvalueFilter, RoarDatasetMultipleAPA	pvalueFilter-method
pvalueFilter,RoarDataset,numeric,numeric-method	RoarDataset-class
pvalueFilter,RoarDatasetMultipleAPA,numeric,numeric-method	RoarDatasetMultipleAPA-class
roar	roar-package
RoarDataset	RoarDataset-constructor
RoarDataset-class	RoarDataset-class
RoarDatasetFromFiles	RoarDatasetFromFiles-constructor
RoarDatasetMultipleAPA	RoarDatasetMultipleAPA-constructor
RoarDatasetMultipleAPA-class	RoarDatasetMultipleAPA-class
RoarDatasetMultipleAPAFromFiles	RoarDatasetMultipleAPAFromFiles-constructor
standardFilter	standardFilter-method
standardFilter, RoarDataset	standardFilter-method
standardFilter, RoarDatasetMultipleAPA	standardFilter-method
standardFilter,RoarDataset,numeric-method	RoarDataset-class
standardFilter,RoarDatasetMultipleAPA,numeric-method	RoarDatasetMultipleAPA-class
totalResults	totalResults-method
totalResults, RoarDataset	totalResults-method
totalResults, RoarDatasetMultipleAPA	totalResults-method
totalResults,RoarDataset-method	RoarDataset-class
totalResults,RoarDatasetMultipleAPA-method	RoarDatasetMultipleAPA-class
