Package: proBAMr
Type: Package
Title: Generating SAM file for PSMs in shotgun proteomics data
Version: 1.44.0
Date: 2025-04-30
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang@vanderbilt.edu>
Description: Mapping PSMs back to genome. The package builds SAM file
        from shotgun proteomics data The package also provides function
        to prepare annotation from GTF file.
License: Artistic-2.0
Depends: R (>= 3.0.1), IRanges, AnnotationDbi
Imports: GenomicRanges, Biostrings, GenomicFeatures, txdbmaker,
        rtracklayer
Suggests: GenomeInfoDbData, RUnit, BiocGenerics
biocViews: ImmunoOncology, Proteomics, MassSpectrometry, Software,
        Visualization
NeedsCompilation: no
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:22:01 UTC
RemoteUrl: https://github.com/bioc/proBAMr
RemoteRef: RELEASE_3_22
RemoteSha: 90383ebcaa0d480069f16d8e615707d4fff1bf2f
Packaged: 2025-11-11 16:43:12 UTC; root
Built: R 4.5.2; ; 2025-11-11 16:51:16 UTC; windows
