Package: prebs
Title: Probe region expression estimation for RNA-seq data for improved
        microarray comparability
Description: The prebs package aims at making RNA-sequencing (RNA-seq)
        data more comparable to microarray data. The comparability is
        achieved by summarizing sequencing-based expressions of probe
        regions using a modified version of RMA algorithm. The pipeline
        takes mapped reads in BAM format as an input and produces
        either gene expressions or original microarray probe set
        expressions as an output.
Version: 1.50.0
Author: Karolis Uziela and Antti Honkela
Maintainer: Karolis Uziela <karolis.uziela@scilifelab.se>
Depends: R (>= 2.14.0), GenomicAlignments, affy, RPA
Imports: parallel, methods, stats, GenomicRanges (>= 1.13.3), IRanges,
        Biobase, Seqinfo, S4Vectors
Suggests: prebsdata, hgu133plus2cdf, hgu133plus2probe
License: Artistic-2.0
Collate: 'PREBS.R'
biocViews: ImmunoOncology, Microarray, RNASeq, Sequencing,
        GeneExpression, Preprocessing
Config/pak/sysreqs: libglpk-dev make libbz2-dev libicu-dev liblzma-dev
        libxml2-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:14:39 UTC
RemoteUrl: https://github.com/bioc/prebs
RemoteRef: RELEASE_3_22
RemoteSha: a3b9bf72c8aa25e0930771d2451ddf62cde9304e
NeedsCompilation: no
Packaged: 2025-11-11 16:45:11 UTC; root
Built: R 4.5.2; ; 2025-11-11 16:53:10 UTC; windows
