BED6WithSeq2GRangesSeq
                        Covert (extended) BED6 file to a GRanges object
PASclassifier-class     Class '"PASclassifier"'
buildClassifier         Build a Naive Bayes Classifier
buildFeatureVector      build Feature Vector_2
classifier              NaiveBayes classifier
cleanUpdTSeq            This package classifies putative
                        polyadenylation sites.
data.NaiveBayes         Training Data
featureVector-class     Class '"featureVector"'
getContextSequences     Retrieve upstream and downstream sequences
modelInfo-class         Class '"modelInfo"'
naiveBayes-class        Class '"naiveBayes"'
predictTestSet          predict authenticity of putative pA sites
