Package: TEQC
Type: Package
Title: Quality control for target capture experiments
Version: 4.32.0
Date: 2025-07-23
Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma
Maintainer: Sarah Bonnin <Sarah.Bonnin@crg.eu>
Description: Target capture experiments combine hybridization-based (in
        solution or on microarrays) capture and enrichment of genomic
        regions of interest (e.g. the exome) with high throughput
        sequencing of the captured DNA fragments. This package provides
        functionalities for assessing and visualizing the quality of
        the target enrichment process, like specificity and sensitivity
        of the capture, per-target read coverage and so on.
Depends: methods, BiocGenerics (>= 0.1.0), IRanges (>= 1.13.5),
        Rsamtools, hwriter
Imports: S4Vectors, Seqinfo, GenomicRanges, Biobase (>= 2.15.1)
License: GPL (>= 2)
LazyLoad: yes
biocViews: QualityControl, Microarray, Sequencing, Genetics
Config/pak/sysreqs: make libbz2-dev liblzma-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:06:21 UTC
RemoteUrl: https://github.com/bioc/TEQC
RemoteRef: RELEASE_3_22
RemoteSha: 536787ce34c9a13c9b74d1e502ac779f07aabec0
NeedsCompilation: no
Packaged: 2025-11-11 17:58:38 UTC; root
Built: R 4.5.2; ; 2025-11-11 18:05:22 UTC; windows
