# Generated by roxygen2: do not edit by hand

export(binomRegMethModel)
export(binomRegMethModelPlot)
export(binomRegMethModelPred)
export(binomRegMethModelSim)
export(binomRegMethPredPlot)
export(formatFromBSseq)
export(formatFromBismark)
export(runSOMNiBUS)
export(splitDataByBed)
export(splitDataByChromatin)
export(splitDataByDensity)
export(splitDataByGRanges)
export(splitDataByGene)
export(splitDataByRegion)
import(mgcv)
importFrom(BiocManager,install)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(IRanges,IRanges)
importFrom(IRanges,end)
importFrom(IRanges,gaps)
importFrom(IRanges,reduce)
importFrom(IRanges,shift)
importFrom(IRanges,start)
importFrom(Matrix,bdiag)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(VGAM,rbetabinom)
importFrom(annotatr,build_annotations)
importFrom(bsseq,getCoverage)
importFrom(bsseq,pData)
importFrom(bsseq,read.bismark)
importFrom(bsseq,seqnames)
importFrom(bsseq,start)
importFrom(data.table,as.data.table)
importFrom(ggplot2,aes)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rug)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_linetype_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(mgcv,gam)
importFrom(mgcv,model.matrix.gam)
importFrom(mgcv,predict.gam)
importFrom(mgcv,s)
importFrom(reshape2,melt)
importFrom(rtracklayer,import)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,model.matrix)
importFrom(stats,pchisq)
importFrom(stats,pf)
importFrom(stats,predict)
importFrom(stats,quasibinomial)
importFrom(stats,rbinom)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(tidyr,"%>%")
importFrom(tidyr,pivot_longer)
importFrom(utils,getFromNamespace)
importFrom(utils,installed.packages)
importFrom(yaml,yaml.load_file)
