add_midparent_expression
                        Add midparent expression to
                        'SummarizedExperiment' object
add_size_factors        Add size factors to normalize count data by
                        library size or by biomass
deg_counts              Data frame with frequencies (absolute and
                        relative) of DEGs per contrast
deg_list                List of differentially expressed genes for all
                        contrasts
expression_partitioning
                        Partition genes in groups based on their
                        expression patterns
get_deg_counts          Get a count table of differentially expressed
                        genes per contrast
get_deg_list            Get a table of differential expression
                        expression statistics with *DESeq2*
go_chlamy               Data frame with GO terms annotated to each gene
                        of Chlamydomonas reinhardtii
ora                     Perform overrepresentation analysis for a set
                        of genes
pca_plot                Perform a principal component analysis (PCA)
                        and plot PCs
plot_expression_partitions
                        Plot expression partitions
plot_expression_triangle
                        Plot a triangle of comparisons of DEG sets
                        among generations
plot_partition_frequencies
                        Plot a barplot of gene frequencies per
                        expression partition
plot_samplecor          Plot a heatmap of pairwise sample correlations
                        with hierarchical clustering
se_chlamy               Expression data (in counts) for 3 Chlamydomonas
                        lines (P1, P2, and F1)
