MatrixList-class        MatrixList object
dmDSdata                Create dmDSdata object
dmDSdata-class          dmDSdata object
dmDSfit-class           dmDSfit object
dmDSprecision-class     dmDSprecision object
dmDStest-class          dmDStest object
dmFilter                Filtering
dmFit                   Fit the Dirichlet-multinomial and/or the
                        beta-binomial full model regression
dmPrecision             Estimate the precision parameter in the
                        Dirichlet-multinomial model
dmSQTLdata              Create dmSQTLdata object
dmSQTLdata-class        dmSQTLdata object
dmSQTLfit-class         dmSQTLfit object
dmSQTLprecision-class   dmSQTLprecision object
dmSQTLtest-class        dmSQTLtest object
dmTest                  Likelihood ratio test to detect differential
                        transcript/exon usage
dm_plotDataDSInfo       Plot the frequency of present features
dm_plotProportions      Plot feature proportions
plotData                Plot data summary
plotPValues             Plot p-value distribution
plotPrecision           Precision versus mean expression plot
plotProportions         Plot feature proportions
