aggregateIter	aggregateIter
aggregateIterParallel	aggregateIterParallel
aggregateMean	aggregateMean
AggregateMetacell	AggregateMetacell
aggregateSum	aggregateSum
aggregateTopn	aggregateTopn
applyAnovasOnProteins	applyAnovasOnProteins
averageIntensities	averageIntensities
barplotEnrichGO_HC	barplotEnrichGO_HC
barplotGroupGO_HC	barplotGroupGO_HC
boxPlotD_HC	boxPlotD_HC
BuildAdjacencyMatrix	BuildAdjacencyMatrix
BuildColumnToProteinDataset	BuildColumnToProteinDataset
buildGraph	buildGraph
BuildMetaCell	BuildMetaCell
check.conditions	check.conditions
check.design	check.design
checkClusterability	checkClusterability
Check_Dataset_Validity	Check_Dataset_Validity
Check_NbValues_In_Columns	Check_NbValues_In_Columns
Children	Children
classic1wayAnova	classic1wayAnova
compareNormalizationD_HC	compareNormalizationD_HC
compute.selection.table	compute.selection.table
compute_t_tests	compute_t_tests
corrMatrixD_HC	corrMatrixD_HC
CountPep	CountPep
createMSnset	createMSnset
createMSnset2	createMSnset2
CVDistD_HC	CVDistD_HC
dapar_hc_chart	dapar_hc_chart
dapar_hc_ExportMenu	dapar_hc_ExportMenu
deleteLinesFromIndices	deleteLinesFromIndices
densityPlotD_HC	densityPlotD_HC
diffAnaComputeAdjustedPValues	diffAnaComputeAdjustedPValues
diffAnaComputeFDR	diffAnaComputeFDR
diffAnaGetSignificant	diffAnaGetSignificant
diffAnaSave	diffAnaSave
diffAnaVolcanoplot	diffAnaVolcanoplot
diffAnaVolcanoplot_rCharts	diffAnaVolcanoplot_rCharts
display.CC.visNet	display.CC.visNet
enrich_GO	enrich_GO
ExtendPalette	ExtendPalette
finalizeAggregation	finalizeAggregation
findMECBlock	findMECBlock
formatHSDResults	formatHSDResults
formatLimmaResult	formatLimmaResult
formatPHResults	formatPHResults
formatPHTResults	formatPHTResults
fudge2LRT	fudge2LRT
get.pep.prot.cc	get.pep.prot.cc
GetCC	GetCC
GetColorsForConditions	GetColorsForConditions
getDesignLevel	getDesignLevel
GetDetailedNbPeptides	GetDetailedNbPeptides
GetDetailedNbPeptidesUsed	GetDetailedNbPeptidesUsed
getIndicesConditions	getIndicesConditions
getIndicesOfLinesToRemove	getIndicesOfLinesToRemove
GetIndices_BasedOnConditions	GetIndices_BasedOnConditions
GetIndices_MetacellFiltering	GetIndices_MetacellFiltering
GetIndices_WholeLine	GetIndices_WholeLine
GetIndices_WholeMatrix	GetIndices_WholeMatrix
GetKeyId	GetKeyId
getListNbValuesInLines	getListNbValuesInLines
GetMatAdj	GetMatAdj
GetMetacell	GetMetacell
GetMetacellTags	GetMetacellTags
GetNbPeptidesUsed	GetNbPeptidesUsed
GetNbTags	GetNbTags
getNumberOf	getNumberOf
getNumberOfEmptyLines	getNumberOfEmptyLines
getPourcentageOfMV	getPourcentageOfMV
getProcessingInfo	getProcessingInfo
getProteinsStats	getProteinsStats
getQuantile4Imp	getQuantile4Imp
GetSoftAvailables	GetSoftAvailables
getTextForAggregation	getTextForAggregation
getTextForAnaDiff	getTextForAnaDiff
getTextForFiltering	getTextForFiltering
getTextForGOAnalysis	getTextForGOAnalysis
getTextForHypothesisTest	getTextForHypothesisTest
getTextForNewDataset	getTextForNewDataset
getTextForNormalization	getTextForNormalization
getTextForpeptideImputation	getTextForpeptideImputation
getTextForproteinImputation	getTextForproteinImputation
GetTypeofData	GetTypeofData
GetUniqueTags	GetUniqueTags
Get_AllComparisons	Get_AllComparisons
globalAdjPval	globalAdjPval
GlobalQuantileAlignment	GlobalQuantileAlignment
GOAnalysisSave	GOAnalysisSave
GraphPepProt	GraphPepProt
group_GO	group_GO
hc_logFC_DensityPlot	hc_logFC_DensityPlot
hc_mvTypePlot2	hc_mvTypePlot2
heatmapD	heatmapD
heatmapForMissingValues	heatmapForMissingValues
histPValue_HC	histPValue_HC
impute.pa2	impute.pa2
inner.aggregate.iter	inner.aggregate.iter
inner.aggregate.topn	inner.aggregate.topn
inner.mean	inner.mean
inner.sum	inner.sum
is.subset	is.subset
LH0	LH0
LH0.lm	LH0.lm
LH1	LH1
LH1.lm	LH1.lm
limmaCompleteTest	limmaCompleteTest
listSheets	listSheets
LOESS	LOESS
make.contrast	make.contrast
make.design	make.design
make.design.1	make.design.1
make.design.2	make.design.2
make.design.3	make.design.3
match.metacell	match.metacell
MeanCentering	MeanCentering
metacell.def	metacell.def
MetaCellFiltering	MetaCellFiltering
MetacellFilteringScope	MetacellFilteringScope
metacellHisto_HC	metacellHisto_HC
metacellPerLinesHistoPerCondition_HC	metacellPerLinesHistoPerCondition_HC
metacellPerLinesHisto_HC	metacellPerLinesHisto_HC
Metacell_DIA_NN	Metacell_DIA_NN
Metacell_generic	Metacell_generic
Metacell_maxquant	Metacell_maxquant
Metacell_proline	Metacell_proline
metacombine	metacombine
mvImage	mvImage
my_hc_chart	my_hc_chart
my_hc_ExportMenu	my_hc_ExportMenu
nonzero	nonzero
normalizeMethods.dapar	normalizeMethods.dapar
NumericalFiltering	NumericalFiltering
NumericalgetIndicesOfLinesToRemove	NumericalgetIndicesOfLinesToRemove
OWAnova	OWAnova
Parent	Parent
pepa.test	pepa.test
pkgs.require	pkgs.require
plotJitter	plotJitter
plotJitter_rCharts	plotJitter_rCharts
plotPCA_Eigen	plotPCA_Eigen
plotPCA_Eigen_hc	plotPCA_Eigen_hc
plotPCA_Ind	plotPCA_Ind
plotPCA_Var	plotPCA_Var
postHocTest	postHocTest
proportionConRev_HC	proportionConRev_HC
QuantileCentering	QuantileCentering
rbindMSnset	rbindMSnset
readExcel	readExcel
reIntroduceMEC	reIntroduceMEC
removeLines	removeLines
samLRT	samLRT
saveParameters	saveParameters
scatterplotEnrichGO_HC	scatterplotEnrichGO_HC
search.metacell.tags	search.metacell.tags
separateAdjPval	separateAdjPval
SetCC	SetCC
SetMatAdj	SetMatAdj
Set_POV_MEC_tags	Set_POV_MEC_tags
splitAdjacencyMat	splitAdjacencyMat
StringBasedFiltering	StringBasedFiltering
StringBasedFiltering2	StringBasedFiltering2
SumByColumns	SumByColumns
SymFilteringOperators	SymFilteringOperators
test.design	test.design
testAnovaModels	testAnovaModels
thresholdpval4fdr	thresholdpval4fdr
translatedRandomBeta	translatedRandomBeta
univ_AnnotDbPkg	univ_AnnotDbPkg
UpdateMetacellAfterImputation	UpdateMetacellAfterImputation
violinPlotD	violinPlotD
visualizeClusters	visualizeClusters
vsn	vsn
wrapper.compareNormalizationD_HC	wrapper.compareNormalizationD_HC
wrapper.corrMatrixD_HC	wrapper.corrMatrixD_HC
wrapper.CVDistD_HC	wrapper.CVDistD_HC
wrapper.dapar.impute.mi	wrapper.dapar.impute.mi
wrapper.heatmapD	wrapper.heatmapD
wrapper.impute.detQuant	wrapper.impute.detQuant
wrapper.impute.fixedValue	wrapper.impute.fixedValue
wrapper.impute.KNN	wrapper.impute.KNN
wrapper.impute.mle	wrapper.impute.mle
wrapper.impute.pa	wrapper.impute.pa
wrapper.impute.pa2	wrapper.impute.pa2
wrapper.impute.slsa	wrapper.impute.slsa
wrapper.mvImage	wrapper.mvImage
wrapper.normalizeD	wrapper.normalizeD
wrapper.pca	wrapper.pca
wrapperCalibrationPlot	wrapperCalibrationPlot
wrapperClassic1wayAnova	wrapperClassic1wayAnova
wrapperRunClustering	wrapperRunClustering
write.excel	write.excel
writeMSnsetToCSV	writeMSnsetToCSV
writeMSnsetToExcel	writeMSnsetToExcel
