# Bioconductor on the AnVIL compute environment

## Documentation for package ‘AnVIL’ version 1.20.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

$-method | RESTful services useful for AnVIL developers
.DollarNames.Service | RESTful services useful for AnVIL developers
.gadget_run | Functions to implement AnVIL gadget interfaces
add_libpaths | Utilities for managing library paths
av-defunct | TABLE, DATA, files, bucket, runtime, and disk elements
avbucket | TABLE, DATA, files, bucket, runtime, and disk elements
avdata | TABLE, DATA, files, bucket, runtime, and disk elements
avdata_import | TABLE, DATA, files, bucket, runtime, and disk elements
avdisks | TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_backup | TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_ls | TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_restore | TABLE, DATA, files, bucket, runtime, and disk elements
avfiles_rm | TABLE, DATA, files, bucket, runtime, and disk elements
avruntime | TABLE, DATA, files, bucket, runtime, and disk elements
avruntimes | TABLE, DATA, files, bucket, runtime, and disk elements
avtable_gadget | Graphical user interfaces for common AnVIL operations
avtable_import_status | TABLE, DATA, files, bucket, runtime, and disk elements
avtable_paged | TABLE, DATA, files, bucket, runtime, and disk elements
avworkflow | DEFUNCT - Workflow configuration
avworkflows | DEFUNCT - Workflow submissions and file outputs
avworkflows-defunct | DEFUNCT - Workflow submissions and file outputs
avworkflow_config-defunct | DEFUNCT - Workflow configuration
avworkflow_configurations | DEFUNCT - Workflow configuration
avworkflow_configuration_get | DEFUNCT - Workflow configuration
avworkflow_configuration_inputs | DEFUNCT - Workflow configuration
avworkflow_configuration_outputs | DEFUNCT - Workflow configuration
avworkflow_configuration_set | DEFUNCT - Workflow configuration
avworkflow_configuration_template | DEFUNCT - Workflow configuration
avworkflow_configuration_update | DEFUNCT - Workflow configuration
avworkflow_files | DEFUNCT - Workflow submissions and file outputs
avworkflow_gadget | Graphical user interfaces for common AnVIL operations
avworkflow_info | DEFUNCT - Workflow submissions and file outputs
avworkflow_localize | DEFUNCT - Workflow submissions and file outputs
avworkflow_name | DEFUNCT - Workflow configuration
avworkflow_namespace | DEFUNCT - Workflow configuration
avworkflow_run | DEFUNCT - Workflow submissions and file outputs
avworkflow_stop | DEFUNCT - Workflow submissions and file outputs
avworkspace_gadget | Graphical user interfaces for common AnVIL operations
browse_workspace | Graphical user interfaces for common AnVIL operations
delocalize | DEFUNCT - Copy packages, folders, or files to or from google buckets
Dockstore | RESTful services useful for AnVIL developers
Dockstore-class | RESTful services useful for AnVIL developers
drs-defunct | DEFUNCT - DRS (Data Repository Service) URL management
drs_access_url | DEFUNCT - DRS (Data Repository Service) URL management
drs_cp | DEFUNCT - DRS (Data Repository Service) URL management
drs_stat | DEFUNCT - DRS (Data Repository Service) URL management
empty_object | RESTful services useful for AnVIL developers
gcloud | DEFUNCT - gcloud command line utility interface
gcloud-defunct | DEFUNCT - gcloud command line utility interface
gcloud_account | DEFUNCT - gcloud command line utility interface
gcloud_cmd | DEFUNCT - gcloud command line utility interface
gcloud_exists | DEFUNCT - gcloud command line utility interface
gcloud_help | DEFUNCT - gcloud command line utility interface
gcloud_project | DEFUNCT - gcloud command line utility interface
gcloud_storage | DEFUNCT - gcloud command line utility interface
gcloud_storage_buckets | DEFUNCT - gcloud command line utility interface
gsutil | DEFUNCT - gsutil command line utility interface
gsutil-defunct | DEFUNCT - gsutil command line utility interface
gsutil_cat | DEFUNCT - gsutil command line utility interface
gsutil_cp | DEFUNCT - gsutil command line utility interface
gsutil_exists | DEFUNCT - gsutil command line utility interface
gsutil_help | DEFUNCT - gsutil command line utility interface
gsutil_ls | DEFUNCT - gsutil command line utility interface
gsutil_pipe | DEFUNCT - gsutil command line utility interface
gsutil_requesterpays | DEFUNCT - gsutil command line utility interface
gsutil_rm | DEFUNCT - gsutil command line utility interface
gsutil_rsync | DEFUNCT - gsutil command line utility interface
gsutil_stat | DEFUNCT - gsutil command line utility interface
Leonardo | RESTful services useful for AnVIL developers
Leonardo-class | RESTful services useful for AnVIL developers
localize | DEFUNCT - Copy packages, folders, or files to or from google buckets
localize-defunct | DEFUNCT - Copy packages, folders, or files to or from google buckets
operations | RESTful services useful for AnVIL developers
operations-method | RESTful services useful for AnVIL developers
print.avworkflow_configuration | DEFUNCT - Workflow configuration
Rawls | RESTful services useful for AnVIL developers
Rawls-class | RESTful services useful for AnVIL developers
schemas | RESTful services useful for AnVIL developers
schemas-method | RESTful services useful for AnVIL developers
Service | RESTful service constructor
Service-class | RESTful services useful for AnVIL developers
Services | RESTful services useful for AnVIL developers
show-method | RESTful services useful for AnVIL developers
tags | RESTful services useful for AnVIL developers
TDR | RESTful services useful for AnVIL developers
TDR-class | RESTful services useful for AnVIL developers
Terra | RESTful services useful for AnVIL developers
Terra-class | RESTful services useful for AnVIL developers
utilities | Utilities for managing library paths