$                       replace slot of Rnits
Rnits-class             rnits class
build.Rnits             Input the RGlist raw data, build a Rnits object
                        and perform filtering and normalization
calculateGCV            Calculate the optimal B-spline model using
                        generalized cross-validation
fit                     Fit model on time series data
getCID                  Cluster IDs of probes/genes from fitted 'Rnits'
getFitModel             Extract fit data from 'Rnits' object
getLR                   Get log-ratios
getNormTwoChannel       Get Normalized channel data for two channel
                        arrays
getPval                 Get p-values
getStat                 Retrieve ratio statistics
plotResults             Plot profiles of top genes/probes
rnits                   rnits.
summarizeProbes         Summarize probe level data to gene level data
summary,Rnits-method    Summary of fit
timeAlign               Curve registration of time series curves
topData                 Data of top genes/probes
yeastchemostat          Yeast chemostat data from Ronen and Botstein
                        (Proc Natl Acad Sci U S A. 2006 Jan
                        10;103(2):389-94. Epub 2005 Dec 28.)
