pathprintGEOData
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathprintGEOData.
Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository
Bioconductor version: 3.8
Pathway Fingerprint vectors that have been pre-calculated for ~390,000 publicly available arrays from the GEO corpus, spanning 6 species and 31 platforms. All data are accompanied by their associated metadata.
Author: Gabriel Altschuler, Sokratis Kariotis
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
citation("pathprintGEOData")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathprintGEOData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathprintGEOData")| pathprintGEOData | R Script | |
| Reference Manual |
Details
| biocViews | Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data, OneChannelData, PathwayInteractionDatabase, Rattus_norvegicus_Data, SequencingData, TwoChannelData |
| Version | 1.12.0 |
| License | GPL |
| Depends | R (>= 3.4) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | pathprint, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | pathprint |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pathprintGEOData_1.12.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pathprintGEOData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pathprintGEOData |
| Package Short Url | https://bioconductor.org/packages/pathprintGEOData/ |
| Package Downloads Report | Download Stats |