RITAN

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see RITAN.

Rapid Integration of Term Annotation and Network resources

Bioconductor version: 3.6

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Author: Michael Zimmermann

Maintainer: Michael Zimmermann <zimmermann.michael at mayo.edu>

Citation (from within R, enter citation("RITAN")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RITAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FunctionalGenomics, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, QualityControl, Software
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (7 years)
License	file LICENSE
Depends	R (>= 3.4), ProNet
Imports	graphics, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, linkcomm, dynamicTreeCut, sqldf, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata
System Requirements
URL

Suggests	rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RITAN_1.2.0.tar.gz
Windows Binary	RITAN_1.2.0.zip
Mac OS X 10.11 (El Capitan)	RITAN_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RITAN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RITAN
Package Short Url	https://bioconductor.org/packages/RITAN/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive