OperaMate
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OperaMate.
An R package of Data Importing, Processing and Analysis for Opera High Content Screening System
Bioconductor version: 3.6
OperaMate is a flexible R package dealing with the data generated by PerkinElmer's Opera High Content Screening System. The functions include the data importing, normalization and quality control, hit detection and function analysis.
Author: Chenglin Liu
Maintainer: Chenglin Liu <cliu at sjtu.edu.cn>
citation("OperaMate")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OperaMate")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OperaMate")| An introduction to OperaMate | R Script | |
| OperaMate-manual.pdf | ||
| Reference Manual |
Details
| biocViews | CellBasedAssays, Normalization, Preprocessing, QualityControl, Software |
| Version | 1.9.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.2.0), stats, methods, grDevices |
| Imports | pheatmap, grid, ggplot2, fBasics, gProfileR, gridExtra, reshape2, stabledist |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OperaMate_1.9.0.tar.gz |
| Windows Binary | OperaMate_1.9.0.zip |
| Mac OS X 10.11 (El Capitan) | OperaMate_1.9.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OperaMate |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OperaMate |
| Package Short Url | https://bioconductor.org/packages/OperaMate/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |