To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rhdf5")
In most cases, you don't need to download the package archive at all.
rhdf5
|
|
|
|
|
HDF5 interface to R
Bioconductor version: Release (3.5)
This R/Bioconductor package provides an interface between HDF5 and R. HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM.
Author: Bernd Fischer, Gregoire Pau
Maintainer: Mike Smith <mike.smith at embl.de>
Citation (from within R,
enter citation("rhdf5")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rhdf5")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rhdf5")
| R Script | rhdf5 | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 2.20.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 12.5 years) |
| License | Artistic-2.0 |
| Depends | methods |
| Imports | zlibbioc |
| LinkingTo | |
| Suggests | bit64, BiocStyle |
| SystemRequirements | GNU make |
| Enhances | |
| URL | |
| Depends On Me | GENE.E, GSCA, HDF5Array |
| Imports Me | biomformat, diffHic, DmelSGI, DOQTL, GENE.E, h5vc, IONiseR, scater, scone |
| Suggests Me | SummarizedExperiment, tximport |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rhdf5_2.20.0.tar.gz |
| Windows Binary | rhdf5_2.20.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | rhdf5_2.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rhdf5 |
| Package Short Url | http://bioconductor.org/packages/rhdf5/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
