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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")
In most cases, you don't need to download the package archive at all.
trackViewer
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see trackViewer.
A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
Bioconductor version: 3.4
Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.
Author: Jianhong Ou, Yong-Xu Wang, Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>
Citation (from within R,
enter citation("trackViewer")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")
Documentation
| HTML | R Script | trackViewer Vignette |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software, Visualization |
| Version | 1.10.2 |
| In Bioconductor since | BioC 2.14 (R-3.1) (3 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.0), grDevices, methods, GenomicRanges, grid |
| Imports | GenomicAlignments, GenomicFeatures, Gviz, pbapply, Rsamtools, rtracklayer, S4Vectors, scales, tools, IRanges, AnnotationDbi, grImport |
| LinkingTo | |
| Suggests | biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocGenerics, BiocStyle, knitr, VariantAnnotation |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | coMET |
| Imports Me | |
| Suggests Me | ChIPpeakAnno |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | trackViewer_1.10.2.tar.gz |
| Windows Binary | trackViewer_1.10.2.zip |
| Mac OS X 10.9 (Mavericks) | trackViewer_1.10.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/trackViewer/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/trackViewer/ |
| Package Downloads Report | Download Stats |
Documentation »
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