To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scater")

In most cases, you don't need to download the package archive at all.

scater

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see scater.

Single-cell analysis toolkit for gene expression data in R

Bioconductor version: 3.4

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control.

Author: Davis McCarthy

Maintainer: Davis McCarthy <davis at ebi.ac.uk>

Citation (from within R, enter citation("scater")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scater")

HTML	R Script	An introduction to the scater package
PDF		Reference Manual
Text		NEWS

biocViews	DataImport, DataRepresentation, DimensionReduction, GeneExpression, Infrastructure, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcriptomics, Visualization
Version	1.2.0
In Bioconductor since	BioC 3.3 (R-3.3) (1 year)
License	GPL (>= 2)
Depends	R (>= 3.3), Biobase, ggplot2, methods
Imports	biomaRt, BiocGenerics, data.table, dplyr, edgeR, ggbeeswarm, grid, limma, matrixStats, parallel, plyr, reshape2, rhdf5, rjson, shiny, shinydashboard, stats, tximport, viridis
LinkingTo
Suggests	BiocStyle, cowplot, cluster, destiny, knitr, monocle, mvoutlier, rmarkdown, Rtsne, testthat, magrittr
SystemRequirements
Enhances
URL	https://github.com/davismcc/scater
BugReports	https://github.com/davismcc/scater/issues
Depends On Me	scran
Imports Me	SC3
Suggests Me	switchde
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	scater_1.2.0.tar.gz
Windows Binary	scater_1.2.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks)	scater_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/scater/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/scater/
Package Downloads Report	Download Stats

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