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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netprioR")
In most cases, you don't need to download the package archive at all.
netprioR
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see netprioR.
A model for network-based prioritisation of genes
Bioconductor version: 3.4
A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.
Author: Fabian Schmich
Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>
Citation (from within R,
enter citation("netprioR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netprioR")
Documentation
| HTML | R Script | netprioR Vignette |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CellBasedAssays, Network, Preprocessing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-3 |
| Depends | methods, graphics, R (>= 3.3) |
| Imports | stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC |
| LinkingTo | |
| Suggests | knitr, BiocStyle, pander |
| SystemRequirements | |
| Enhances | |
| URL | http://bioconductor.org/packages/netprioR |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | netprioR_1.0.0.tar.gz |
| Windows Binary | netprioR_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | netprioR_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/netprioR/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/netprioR/ |
| Package Downloads Report | Download Stats |
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